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For Dummies® Bonus Material
By: Jean-Michel Claverie Ph.D., Cedric Notredame Ph.D.

[Bio FD Home][Ch.1][Ch.2][Ch.3][Ch.4][Ch.5][Ch.6][Ch.7][Ch.8][Ch.9][Ch.10][Ch.11][Ch.12][Ch.13][Ch.15]

Chapter 11: Working with Protein 3-D Structures

Chapter 11 images

Predicting secondary structures

URL	Description
bioinf.cs.ucl.ac.uk/psipred/	PsiPred for predicting protein secondary structures
cubic.bioc.columbia.edu/predictprotein www.embl-heidelberg.de/predictprotein www.cmbi.kun.nl/bioinf/predictprotein www.sdsc.edu/predictprotein	PredictProtein for predicting protein secondary structures
www.rcsb.org/pdb/	The Protein Database, containing every publicly available protein structure
www.ncbi.nlm.nih.gov/Structure	The NCBI section dedicated to structure analysis
www.rasmol.org www.expasy.ch/swissmod/SWISS-MODEL.html	Two very popular PDB viewers (you must install them on your machine)
www.biochem.ucl.ac.uk/bsm/cath_new/ www2.ebi.ac.uk/dali/ scop.mrc-lmb.cam.ac.uk/scop	Popular structure classification collections
guitar.rockefeller.edu/modeller/modeller.html www.expasy.ch/swissmod/SWISS-MODEL.html	Homology modeling
www.ncbi.nlm.nih.gov/Structure/RESEARCH/threading.html compbio.ornl.gov/structure/prospect	Threading sequences onto PDB structures
folding.stanford.edu	ab-initio folding
www.scripps.edu/brooks molmovdb.mbb.yale.edu/	MolMovDB Molecular dynamics
www.bio.vu.nl/nvtb/Docking.html	Protein Interaction


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